VIRsiRNAdb

../../tmp/servers/virsirnadb/1528214100
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi2239	1	`aagggctatcaacctatagat`	21
AY278491.2	SARS coronavirus HKU-39849, complete genome	22083	`.....................`	22103	100
AY278554.2	SARS coronavirus CUHK-W1, complete genome	22068	`.....................`	22088	100
AY278741.1	SARS coronavirus Urbani, complete genome	22083	`.....................`	22103	100
AY278488.2	SARS coronavirus BJ01, complete genome	22064	`.....................`	22084	100
AY283794.1	SARS coronavirus Sin2500, complete genome	22067	`.....................`	22087	100
AY283795.1	SARS coronavirus Sin2677, complete genome	22067	`.....................`	22087	100
AY283796.1	SARS coronavirus Sin2679, complete genome	22067	`.....................`	22087	100
AY283797.1	SARS coronavirus Sin2748, complete genome	22067	`.....................`	22087	100
AY291451.1	SARS coronavirus TW1, complete genome	22083	`.....................`	22103	100
AY297028.1	SARS coronavirus ZJ01, complete genome	22074	`.....................`	22094	100
AY278489.2	SARS coronavirus GD01, complete genome	22067	`.....................`	22087	100
AY278487.3	SARS coronavirus BJ02, complete genome	22083	`.....................`	22103	100
AY278490.3	SARS coronavirus BJ03, complete genome	22079	`.....................`	22099	100
AY279354.2	SARS coronavirus BJ04, complete genome	22067	`.....................`	22087	100
AY291315.1	SARS coronavirus Frankfurt 1, complete genome	22083	`.....................`	22103	100
AY321118.1	SARS coronavirus TWC, complete genome	22083	`.....................`	22103	100
AY338174.1	SARS coronavirus Taiwan TC1, complete genome	22014	`.....................`	22034	100
AY338175.1	SARS coronavirus Taiwan TC2, complete genome	22014	`.....................`	22034	100
AY345986.1	SARS coronavirus CUHK-AG01, complete genome	22068	`.....................`	22088	100
AY345987.1	SARS coronavirus CUHK-AG02, complete genome	22068	`.....................`	22088	100
AY345988.1	SARS coronavirus CUHK-AG03, complete genome	22068	`.....................`	22088	100
AY323977.2	SARS coronavirus HSR 1, complete genome	22083	`.....................`	22103	100
AY348314.1	SARS coronavirus Taiwan TC3, complete genome	22014	`.....................`	22034	100
AY351680.1	SARS coronavirus ZMY 1, complete genome	22103	`.....................`	22123	100
AP006557.1	SARS coronavirus TWH genomic RNA, complete genome	22083	`.....................`	22103	100
AP006558.1	SARS coronavirus TWJ genomic RNA, complete genome	22083	`.....................`	22103	100
AP006559.1	SARS coronavirus TWK genomic RNA, complete genome	22083	`.....................`	22103	100
AP006560.1	SARS coronavirus TWS genomic RNA, complete genome	22083	`.....................`	22103	100
AP006561.1	SARS coronavirus TWY genomic RNA, complete genome	22083	`.....................`	22103	100
AY362698.1	SARS coronavirus TWC2, complete genome	22083	`.....................`	22103	100
AY362699.1	SARS coronavirus TWC3, complete genome	22083	`.....................`	22103	100
AY310120.1	SARS coronavirus FRA, complete genome	22083	`.....................`	22103	100
AY304486.1	SARS coronavirus SZ3, complete genome	22068	`.....................`	22088	100
AY304488.1	SARS coronavirus SZ16, complete genome	22068	`.....................`	22088	100
AY304495.1	SARS coronavirus GZ50, complete genome	22068	`.....................`	22088	100
AY283798.2	SARS coronavirus Sin2774, complete genome	22067	`.....................`	22087	100
AY427439.1	SARS coronavirus AS, complete genome	22067	`.....................`	22087	100
AY394977.1	SARS coronavirus GZ-A, partial genome	22032	`.....................`	22052	100
AY394978.1	SARS coronavirus GZ-B, complete genome	22011	`.....................`	22031	100
AY394979.1	SARS coronavirus GZ-C, complete genome	22031	`.....................`	22051	100
AY394980.1	SARS coronavirus GZ-D, partial genome	22037	`.....................`	22057	100
AY394981.1	SARS coronavirus HGZ8L1-A, partial genome	22029	`.....................`	22049	100
AY394982.1	SARS coronavirus HGZ8L1-B, partial genome	22031	`.....................`	22051	100
AY394983.1	SARS coronavirus HSZ2-A, complete genome	22031	`.....................`	22051	100
AY394984.1	SARS coronavirus HSZ-A, partial genome	22036	`.....................`	22056	100
AY394985.1	SARS coronavirus HSZ-Bb, complete genome	21833	`.....................`	21853	100
AY394986.1	SARS coronavirus HSZ-Cb, complete genome	22032	`.....................`	22052	100
AY394987.1	SARS coronavirus HZS2-Fb, complete genome	22041	`.....................`	22061	100
AY394988.1	SARS coronavirus JMD, partial genome	21997	`.....................`	22017	100
AY394989.1	SARS coronavirus HZS2-D, complete genome	22068	`.....................`	22088	100
AY394990.1	SARS coronavirus HZS2-E, complete genome	22068	`.....................`	22088	100
AY394991.1	SARS coronavirus HZS2-Fc, complete genome	22068	`.....................`	22088	100
AY394992.1	SARS coronavirus HZS2-C, complete genome	22068	`.....................`	22088	100
AY394993.1	SARS coronavirus HGZ8L2, complete genome	22068	`.....................`	22088	100
AY394994.1	SARS coronavirus HSZ-Bc, complete genome	22068	`.....................`	22088	100
AY394995.1	SARS coronavirus HSZ-Cc, complete genome	22068	`.....................`	22088	100
AY394996.1	SARS coronavirus ZS-B, complete genome	22068	`.....................`	22088	100
AY394997.1	SARS coronavirus ZS-A, complete genome	22068	`.....................`	22088	100
AY394998.1	SARS coronavirus LC1, complete genome	22068	`.....................`	22088	100
AY394999.1	SARS coronavirus LC2, complete genome	22068	`.....................`	22088	100
AY395000.1	SARS coronavirus LC3, complete genome	22068	`.....................`	22088	100
AY395001.1	SARS coronavirus LC4, complete genome	22068	`.....................`	22088	100
AY395002.1	SARS coronavirus LC5, complete genome	22068	`.....................`	22088	100
AY395003.1	SARS coronavirus ZS-C, complete genome	22032	`.....................`	22052	100
AY395004.1	SARS coronavirus HZS2-Bb, partial genome	22036	`.....................`	22056	100
AY313906.1	SARS coronavirus GD69, complete genome	22094	`.....................`	22114	100
AY350750.1	SARS coronavirus PUMC01, complete genome	22070	`.....................`	22090	100
AY357075.1	SARS coronavirus PUMC02, complete genome	22069	`.....................`	22089	100
AY357076.1	SARS coronavirus PUMC03, complete genome	22069	`.....................`	22089	100
AY282752.2	SARS coronavirus CUHK-Su10, complete genome	22068	`.....................`	22088	100
AY461660.1	SARS coronavirus SoD, complete genome	22068	`.....................`	22088	100
AY485277.1	SARS coronavirus Sino1-11, complete genome	22083	`.....................`	22103	100
AY485278.1	SARS coronavirus Sino3-11, complete genome	22083	`.....................`	22103	100
AY463059.1	SARS coronavirus ShanghaiQXC1, complete genome	22004	`.....................`	22024	100
AY463060.1	SARS coronavirus ShanghaiQXC2, complete genome	21425	`.....................`	21445	100
AY502923.1	SARS coronavirus TW10, complete genome	22083	`.....................`	22103	100
AY502924.1	SARS coronavirus TW11, complete genome	22083	`.....................`	22103	100
AY502925.1	SARS coronavirus TW2, complete genome	22083	`.....................`	22103	100
AY502926.1	SARS coronavirus TW3, complete genome	22083	`.....................`	22103	100
AY502927.1	SARS coronavirus TW4, complete genome	22083	`.....................`	22103	100
AY502928.1	SARS coronavirus TW5, complete genome	22083	`.....................`	22103	100
AY502929.1	SARS coronavirus TW6, complete genome	22083	`.....................`	22103	100
AY502930.1	SARS coronavirus TW7, complete genome	22083	`.....................`	22103	100
AY502931.1	SARS coronavirus TW8, complete genome	22083	`.....................`	22103	100
AY502932.1	SARS coronavirus TW9, complete genome	22083	`.....................`	22103	100
AY394850.2	SARS coronavirus WHU, complete genome	22083	`.....................`	22103	100
AY508724.1	SARS coronavirus NS-1, complete genome	22067	`.....................`	22087	100
AY390556.1	SARS coronavirus GZ02, complete genome	22083	`.....................`	22103	100
AY515512.1	SARS coronavirus HC/SZ/61/03, complete genome	22060	`.....................`	22080	100
AY545914.1	SARS coronavirus isolate HC/SZ/79/03, complete genome	22060	`.....................`	22080	100
AY545915.1	SARS coronavirus isolate HC/SZ/DM1/03, complete genome	22051	`.....................`	22071	100
AY545916.1	SARS coronavirus isolate HC/SZ/266/03, complete genome	22049	`.....................`	22069	100
AY545917.1	SARS coronavirus isolate HC/GZ/81/03, complete genome	22047	`.....................`	22067	100
AY545918.1	SARS coronavirus isolate HC/GZ/32/03, complete genome	22049	`.....................`	22069	100
AY545919.1	SARS coronavirus isolate CFB/SZ/94/03, complete genome	22062	`.....................`	22082	100
AY559081.1	SARS coronavirus Sin842, complete genome	22071	`.....................`	22091	100
AY559082.1	SARS coronavirus Sin852, complete genome	22082	`.....................`	22102	100
AY559083.1	SARS coronavirus Sin3408, complete genome	22117	`.....................`	22137	100
AY559084.1	SARS coronavirus Sin3765V, complete genome	22067	`.....................`	22087	100
AY559085.1	SARS coronavirus Sin848, complete genome	22067	`.....................`	22087	100
AY559086.1	SARS coronavirus Sin849, complete genome	22067	`.....................`	22087	100
AY559087.1	SARS coronavirus Sin3725V, complete genome	22067	`.....................`	22087	100
AY559088.1	SARS coronavirus SinP1, complete genome	22068	`.....................`	22088	100
AY559089.1	SARS coronavirus SinP2, complete genome	22074	`.....................`	22094	100
AY559090.1	SARS coronavirus SinP3, complete genome	22076	`.....................`	22096	100
AY559091.1	SARS coronavirus SinP4, complete genome	22067	`.....................`	22087	100
AY559092.1	SARS coronavirus SinP5, complete genome	22067	`.....................`	22087	100
AY559093.1	SARS coronavirus Sin845, complete genome	22067	`.....................`	22087	100
AY559094.1	SARS coronavirus Sin846, complete genome	22069	`.....................`	22089	100
AY559095.1	SARS coronavirus Sin847, complete genome	22073	`.....................`	22093	100
AY559096.1	SARS coronavirus Sin850, complete genome	22075	`.....................`	22095	100
AY559097.1	SARS coronavirus Sin3408L, complete genome	22068	`.....................`	22088	100
AY568539.1	SARS coronavirus GZ0401, complete genome	22033	`.....................`	22053	100
AY595412.1	SARS coronavirus LLJ-2004, complete genome	22061	`.....................`	22081	100
AY654624.1	SARS coronavirus TJF, complete genome	22082	`.....................`	22102	100
AY572034.1	SARS coronavirus civet007, complete genome	22057	`.....................`	22077	100
AY572035.1	SARS coronavirus civet010, complete genome	22035	`.....................`	22055	100
AY572038.1	SARS coronavirus civet020, complete genome	22012	`.....................`	22032	100
AY714217.1	SARS Coronavirus CDC#200301157, complete genome	22083	`.....................`	22103	100
AY613947.1	SARS coronavirus GZ0402, complete genome	22033	`.....................`	22053	100
AY613948.1	SARS coronavirus PC4-13, complete genome	22033	`.....................`	22053	100
AY613949.1	SARS coronavirus PC4-136, complete genome	22033	`.....................`	22053	100
AY613950.1	SARS coronavirus PC4-227, complete genome	22033	`.....................`	22053	100
AY686864.1	SARS coronavirus B039, complete genome	22042	`.....................`	22062	100

VIRsiRNAdb

Database of Viral siRNA / shRNA